Last updated: 2024-02-19
Checks: 6 1
Knit directory: synovialscrnaseq/
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html | a18fb61 | retogerber | 2021-05-26 | workflow with no cultured and no low quality samples |
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html | 480bf2b | retogerber | 2021-05-25 | EC DA analysis |
html | a301681 | retogerber | 2021-05-19 | update complete analysis, new samples added |
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Rmd | a28e4c4 | retogerber | 2021-01-29 | update website |
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This repo contains the scripts for the paper “A comprehensive single-cell atlas of freshly-dissociated human synovium in inflammatory arthritis with optimized dissociation protocol for prospective synovial tissue collection”.
The following is a list of the available scripts, to be run in the given order.
A note on how to rerun the analysis is given in the About page.
sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] magrittr_2.0.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 whisker_0.4 knitr_1.31 workflowr_1.7.0
[5] here_1.0.1 R6_2.5.0 rlang_0.4.10 stringr_1.4.0
[9] tools_4.0.3 xfun_0.21 git2r_0.30.1 htmltools_0.5.1.1
[13] ellipsis_0.3.1 yaml_2.2.1 digest_0.6.27 rprojroot_2.0.2
[17] tibble_3.0.6 lifecycle_1.0.0 crayon_1.4.1 later_1.1.0.1
[21] vctrs_0.3.6 promises_1.2.0.1 fs_1.5.0 glue_1.4.2
[25] evaluate_0.14 rmarkdown_2.6 stringi_1.5.3 compiler_4.0.3
[29] pillar_1.4.7 httpuv_1.5.5 pkgconfig_2.0.3